Journal: Frontiers in Veterinary Science
Article Title: Genomic comparison between Mycobacterium bovis and Mycobacterium microti and in silico analysis of peptide-based biomarkers for serodiagnosis
doi: 10.3389/fvets.2024.1446930
Figure Lengend Snippet: Presence of RDs and MiDs regions in the Belgian M. microti datasets and the selected reference genomes. This graph shows the coverage percentage of the regions of difference (RDs) and M. microti -specific deleted regions (MiDs). The y-axis indicates the percentage of the region that was covered by reads, the x-axis indicates the different strains. The bars are colored by species as indicated in the legend. The dashed line indicates the 75% threshold that was used to classify regions as present or absent. The following reference and Belgian strains were included: M. bovis BCG Danish 1311 (SRR7983756), M. bovis AF2122/97 (ERR1744454), M. bovis MB3601 (ERR3825346), M. microti OV254 (ERR027295), M. microti VAR696 (SRR25473322), M. microti MI20-1 (SRR25473321), and M. microti MI20-2 (SRR25473320).
Article Snippet: All available M. microti datasets in the Sequence Read Archive (SRA) at the National Center for Biotechnology Information (NCBI) that were generated by Illumina sequencing were retrieved (accessed on the 24th of January 2022), for which an overview is provided in .
Techniques: